| Protein ZmSBP28 | |
|---|---|
|
ZmSBP28 is a protein in the SBP family.
|
|
| Information | |
| TF Name: | ZmSBP28 |
| Species: | Maize |
| TF Family: | SBP |
| Gene Name(Synonym): | SBP28 |
| Uniprot ID: | K7TP97 |
| Subgenome: | 2 |
Protein ZmSBP28
ZmSBP28 is a protein in the SBP family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF03110 | |
| Zm00001eb432520_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d026491 | DAPseq |  |
sequence | fimo | position |
| Zm00001d026491 | DAPseq |  |
sequence | fimo | position |
| Zm00001d026491 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d026491 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmSBP28 is the regulator
Interactions where ZmSBP28 is the target
Expand
Zm00001eb432520_T001 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MMNLSAAAAAAANACDEFPYAPPNAAAPPSLFPIMEQESSIHREHQQQQLGLGYNPEPNSLALLPPSDAAHHTTIAAGPH
DILQFYPASASHYLAASNPYGHFAGSSSFHQSSSSSSSYYYPPPPQAAPEYYFPTLVSSAEENMASFAATQLGLNLGYRT
YFPPRGGYTYGHHPPRCQAEGCKADLSGAKRYHRRHKVCDHHSKAPVVVTAGGMHQRFCQQCSRFHLLDEFDDAKKSCRK
RLADHNRRRRKSKPSDADAGDKKRAHANKAAPAKDKAGSSSKHMHIAGLGTQILGSTLLSKEQDQAMDLGEVVKEAVDPK
GKASMLQHHGIHQQQHHGIHQQHHGFPFHSSSAGSSDTTSNIAQVQEPSLGFHHQHHQHSNVLQLGQAMFDLDFDH
MMNLSAAAAAAANACDEFPYAPPNAAAPPSLFPIMEQESSIHREHQQQQLGLGYNPEPNSLALLPPSDAAHHTTIAAGPH
DILQFYPASASHYLAASNPYGHFAGSSSFHQSSSSSSSYYYPPPPQAAPEYYFPTLVSSAEENMASFAATQLGLNLGYRT
YFPPRGGYTYGHHPPRCQAEGCKADLSGAKRYHRRHKVCDHHSKAPVVVTAGGMHQRFCQQCSRFHLLDEFDDAKKSCRK
RLADHNRRRRKSKPSDADAGDKKRAHANKAAPAKDKAGSSSKHMHIAGLGTQILGSTLLSKEQDQAMDLGEVVKEAVDPK
GKASMLQHHGIHQQQHHGIHQQHHGFPFHSSSAGSSDTTSNIAQVQEPSLGFHHQHHQHSNVLQLGQAMFDLDFDH
MMNLSAAAAAAANACDEFPYAPPNAAAPPSLFPIMEQESSIHREHQQQQLGLGYNPEPNSLALLPPSDAAHHTTIAAGPH
DILQFYPASASHYLAASNPYGHFAGSSSFHQSSSSSSSYYYPPPPQAAPEYYFPTLVSSAEENMASFAATQLGLNLGYRT
YFPPRGGYTYGHHPPRCQAEGCKADLSGAKRYHRRHKVCDHHSKAPVVVTAGGMHQRFCQQCSRFHLLDEFDDAKKSCRK
RLADHNRRRRKSKPSDADAGDKKRAHANKAAPAKDKAGSSSKHMHIAGLGTQILGSTLLSKEQDQAMDLGEVVKEAVDPK
GKASMLQHHGIHQQQHHGIHQQHHGFPFHSSSAGSSDTTSNIAQVQEPSLGFHHQHHQHSNVLQLGQAMFDLDFDH
MMNLSAAAAAAANACDEFPYAPPNAAAPPSLFPIMEQESSIHREHQQQQLGLGYNPEPNSLALLPPSDAAHHTTIAAGPH
DILQFYPASASHYLAASNPYGHFAGSSSFHQSSSSSSSYYYPPPPQAAPEYYFPTLVSSAEENMASFAATQLGLNLGYRT
YFPPRGGYTYGHHPPRCQAEGCKADLSGAKRYHRRHKVCDHHSKAPVVVTAGGMHQRFCQQCSRFHLLDEFDDAKKSCRK
RLADHNRRRRKSKPSDADAGDKKRAHANKAAPAKDKAGSSSKHMHIAGLGTQILGSTLLSKEQDQAMDLGEVVKEAVDPK
GKASMLQHHGIHQQQHHGIHQQHHGFPFHSSSAGSSDTTSNIAQVQEPSLGFHHQHHQHSNVLQLGQAMFDLDFDH
MMNLSAAAAAAANACDEFPYAPPNAAAPPSLFPIMEQESSIHREHQQQQLGLGYNPEPNSLALLPPSDAAHHTTIAAGPH
DILQFYPASASHYLAASNPYGHFAGSSSFHQSSSSSSSYYYPPPPQAAPEYYFPTLVSSAEENMASFAATQLGLNLGYRT
YFPPRGGYTYGHHPPRCQAEGCKADLSGAKRYHRRHKVCDHHSKAPVVVTAGGMHQRFCQQCSRFHLLDEFDDAKKSCRK
RLADHNRRRRKSKPSDADAGDKKRAHANKAAPAKDKAGSSSKHMHIAGLGTQILGSTLLSKEQDQAMDLGEVVKEAVDPK
GKASMLQHHGIHQQQHHGIHQQHHGFPFHSSSAGSSDTTSNIAQVQEPSLGFHHQHHQHSNVLQLGQAMFDLDFDH
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF03110 |
|
| Hover here to show all domains | |
Nucleotide Sequence
Copy to clipboard
Expand
CTCCACCACTCGTTTCGTGGAACCC...
CTCCACCACTCGTTTCGTGGAACCCTAGACGACAAGTACCCTGGCTATAGCTCGCAATCCGTCTCCACCCCGCTAGCTGAAAAAGAGATCCCGCGCGCATATATCTGTGCCATCGCCATCACCCACCATGGCCGGGGCAACACCACCATAGCACAGCACTAGTGTGCCTGTCCTTGCCGCCGTCCTCCCCTCCGTCCCCTACGACTCCATTTCCGTGTGCTCGTGTGTGTCCTCCCCTCCCAGCTAGTGCACAGATCGACCGACCCACCGACCGACCGATCGATCCATCGAACATAAGCCAGGTAGCAGCAAGCCGGGGCGGAGAAGATGATGAACCTATCGGCTGCCGCTGCCGCCGCCGCCAACGCCTGCGATGAGTTCCCCTACGCGCCGCCCAACGCGGCCGCTCCCCCTTCTCTGTTCCCAATCATGGAGCAGGAGAGCAGCATCCACAGGGAGCATCAGCAGCAGCAGCTGGGCCTGGGCTACAACCCCGAGCCCAACTCCCTGGCACTGCTGCCCCCGTCCGACGCCGCCCACCACACCACTATCGCCGCCGGCCCCCACGACATCCTCCAGTTCTACCCTGCTTCCGCCTCGCACTACCTCGCCGCCTCCAACCCCTACGGCCACTTCGCCGGGAGCTCCTCCTTCCACCAGTCGTCGTCGTCGTCGTCGTCGTACTACTACCCTCCGCCACCGCAGGCCGCGCCCGAGTACTACTTCCCCACCCTCGTCAGCTCCGCCGAGGAGAACATGGCCAGCTTCGCCGCCACGCAGCTCGGCCTCAACCTCGGCTACCGCACCTACTTCCCGCCGAGAGGCGGGTACACGTACGGCCACCACCCGCCGCGCTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCGGCGCCAAGCGCTACCACCGCCGCCACAAGGTGTGCGACCACCACTCCAAGGCGCCGGTCGTCGTCACCGCCGGAGGCATGCACCAGAGGTTCTGCCAGCAGTGCAGCAGATTCCATCTGCTGGATGAGTTCGACGATGCCAAGAAGAGCTGTAGGAAACGGCTAGCGGACCACAACCGGCGCCGACGCAAGTCAAAGCCATCGGATGCTGATGCCGGAGACAAGAAAAGAGCACATGCGAACAAAGCAGCTCCTGCTAAAGACAAAGCAGGAAGTAGCAGCAAGCACATGCACATTGCAGGGTTGGGTACACAGATCCTGGGGAGCACACTCTTGTCCAAAGAACAAGATCAAGCCATGGATCTTGGAGAAGTGGTGAAAGAAGCAGTGGATCCCAAGGGGAAGGCATCAATGCTACAGCATCACGGCATTCATCAGCAACAACATCACGGAATCCATCAGCAACATCACGGCTTCCCCTTCCATTCATCGTCAGCAGGCTCTAGTGACACCACATCAAATATAGCTCAAGTGCAAGAGCCAAGCTTAGGGTTCCACCATCAGCACCATCAACACAGCAACGTCTTGCAGCTCGGTCAGGCTATGTTTGATCTCGACTTCGATCACTAGTCAATATGTGATGCACTCTCTCTCTCTCTCTCTCTCACCCACCCCTCCCTCCCTCTTTCTTTGTTTGTGCGCATAATCCGAATGTTTTTCCCTTTTTAAATTATCTGTGTCCATTGCTGTAATGTGGACATAGTAATGATAGTGTATGCTTTGTTTGTCAT
GRMZM2G058588_T01 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MMNLSAAAAAAANACDEFPYAPPNAAAPPSLFPIMEQESSIHREHQQQQLGLGYNPEPNSLALLPPSDAAHHTTIAAGPH
DILQFYPASASHYLAASNPYGHFAGSSSFHQSSSSSSSYYYPPPPQAAPEYYFPTLVSSAEENMASFAATQLGLNLGYRT
YFPPRGGYTYGHHPPRCQAEGCKADLSGAKRYHRRHKVCDHHSKAPVVVTAGGMHQRFCQQCSRFHLLDEFDDAKKSCRK
RLADHNRRRRKSKPSDADAGDKKRAHANKAAPAKDKAGSSSKHMHIAGLGTQILGSTLLSKEQDQAMDLGEVVKEAVDPK
GKASMLQHHGIHQQQHHGIHQQHHGFPFHSSSAGSSDTTSNIAQVQEPSLGFHHQHHQHSNVLQLGQAMFDLDFDH
Nucleotide Sequence
Copy to clipboard
Expand
AGCACAGCACTAGTGTGCCTGTCCT...
AGCACAGCACTAGTGTGCCTGTCCTTGCCGCCGTCCTCCCCTCCGTCCCCTACGACTCCATTTCCGTGTGCTCGTGTGTGTCCTCCCCTCCCAGCTAGTGCACAGATCGACCGACCCACCGACCGACCGATCGATCCATCGAACATAAGCCAGGTAGCAGCAAGCCGGGGCGGAGAAGATGATGAACCTATCGGCTGCCGCTGCCGCCGCCGCCAACGCCTGCGATGAGTTCCCCTACGCGCCGCCCAACGCGGCCGCTCCCCCTTCTCTGTTCCCAATCATGGAGCAGGAGAGCAGCATCCACAGGGAGCATCAGCAGCAGCAGCTGGGCCTGGGCTACAACCCCGAGCCCAACTCCCTGGCACTGCTGCCCCCGTCCGACGCCGCCCACCACACCACTATCGCCGCCGGCCCCCACGACATCCTCCAGTTCTACCCTGCTTCCGCCTCGCACTACCTCGCCGCCTCCAACCCCTACGGCCACTTCGCCGGGAGCTCCTCCTTCCACCAGTCGTCGTCGTCGTCGTCGTCGTACTACTACCCTCCGCCGCCGCAGGCCGCGCCCGAGTACTACTTCCCCACCCTCGTCAGCTCCGCCGAGGAGAACATGGCCAGCTTCGCCGCCACGCAGCTCGGCCTCAACCTCGGCTACCGCACCTACTTCCCGCCGAGAGGCGGGTACACGTACGGCCACCACCCGCCGCGCTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCGGCGCCAAGCGCTACCACCGCCGCCACAAGGTGTGCGACCACCACTCCAAGGCGCCGGTCGTCGTCACCGCCGGAGGCATGCACCAGAGGTTCTGCCAGCAGTGCAGCAGATTCCATCTGCTGGATGAGTTCGACGATGCCAAGAAGAGCTGTAGGAAACGGCTAGCGGACCACAACCGGCGCCGACGCAAGTCAAAGCCATCGGATGCTGATGCCGGAGACAAGAAAAGAGCACATGCGAACAAAGCAGCTCCTGCTAAAGACAAAGCAGGAAGTAGCAGCAAGCACATGCACATTGCAGGGTTGGGTACACAGATCCTGGGGAGCACACTCTTGTCCAAAGAACAAGATCAAGCCATGGATCTTGGAGAAGTGGTGAAAGAAGCAGTGGATCCCAAGGGGAAGGCATCAATGCTACAGCATCACGGCATTCATCAGCAACAACATCACGGAATCCATCAGCAACATCACGGCTTCCCCTTCCATTCATCGTCAGCAGGCTCTAGTGACACCACATCAAATATAGCTCAAGTGCAAGAGCCAAGCTTAGGGTTCCACCATCAGCACCATCAACACAGCAACGTCTTGCAGCTCGGTCAGGCTATGTTTGATCTCGACTTCGATCACTAGTCAATATGTGATGCACTCTCTCTCTCTCTCTCTCTCACCCACCCCTCCCTCCCTCTTTCTTTGTTTGTGCGCATAATCCGAATGTTTTTCCCTTTTTAAATTATCTGTGTCCATTGCTGTAATGTGGACATAGTAATGATAGTGTATGCTTTG
Zm00001d026491_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MMNLSAAAAAAANACDEFPYAPPNAAAPPSLFPIMEQESSIHREHQQQQLGLGYNPEPNSLALLPPSDAAHHTTIAAGPH
DILQFYPASASHYLAASNPYGHFAGSSSFHQSSSSSSSYYYPPPPQAAPEYYFPTLVSSAEENMASFAATQLGLNLGYRT
YFPPRGGYTYGHHPPRCQAEGCKADLSGAKRYHRRHKVCDHHSKAPVVVTAGGMHQRFCQQCSRFHLLDEFDDAKKSCRK
RLADHNRRRRKSKPSDADAGDKKRAHANKAAPAKDKAGSSSKHMHIAGLGTQILGSTLLSKEQDQAMDLGEVVKEAVDPK
GKASMLQHHGIHQQQHHGIHQQHHGFPFHSSSAGSSDTTSNIAQVQEPSLGFHHQHHQHSNVLQLGQAMFDLDFDH
Nucleotide Sequence
Copy to clipboard
Expand
GAGATCCCGCGCGCATATATCTGTG...
GAGATCCCGCGCGCATATATCTGTGCCATCGCCATCACCCACCATGGCCGGGGCAACACCACCATAGCACAGCACTAGTGTGCCTGTCCTTGCCGCCGTCCTCCCCTCCGTCCCCTACGACTCCATTTCCGTGTGCTCGTGTGTGTCCTCCCCTCCCAGCTAGTGCACAGATCGACCGACCCACCGACCGACCGATCGATCCATCGAACATAAGCCAGGTAGCAGCAAGCCGGGGCGGAGAAGATGATGAACCTATCGGCTGCCGCTGCCGCCGCCGCCAACGCCTGCGATGAGTTCCCCTACGCGCCGCCCAACGCGGCCGCTCCCCCTTCTCTGTTCCCAATCATGGAGCAGGAGAGCAGCATCCACAGGGAGCATCAGCAGCAGCAGCTGGGCCTGGGCTACAACCCCGAGCCCAACTCCCTGGCACTGCTGCCCCCGTCCGACGCCGCCCACCACACCACTATCGCCGCCGGCCCCCACGACATCCTCCAGTTCTACCCTGCTTCCGCCTCGCACTACCTCGCCGCCTCCAACCCCTACGGCCACTTCGCCGGGAGCTCCTCCTTCCACCAGTCGTCGTCGTCGTCGTCGTCGTACTACTACCCTCCGCCACCGCAGGCCGCGCCCGAGTACTACTTCCCCACCCTCGTCAGCTCCGCCGAGGAGAACATGGCCAGCTTCGCCGCCACGCAGCTCGGCCTCAACCTCGGCTACCGCACCTACTTCCCGCCGAGAGGCGGGTACACGTACGGCCACCACCCGCCGCGCTGCCAGGCCGAGGGCTGCAAGGCCGACCTCTCCGGCGCCAAGCGCTACCACCGCCGCCACAAGGTGTGCGACCACCACTCCAAGGCGCCGGTCGTCGTCACCGCCGGAGGCATGCACCAGAGGTTCTGCCAGCAGTGCAGCAGATTCCATCTGCTGGATGAGTTCGACGATGCCAAGAAGAGCTGTAGGAAACGGCTAGCGGACCACAACCGGCGCCGACGCAAGTCAAAGCCATCGGATGCTGATGCCGGAGACAAGAAAAGAGCACATGCGAACAAAGCAGCTCCTGCTAAAGACAAAGCAGGAAGTAGCAGCAAGCACATGCACATTGCAGGGTTGGGTACACAGATCCTGGGGAGCACACTCTTGTCCAAAGAACAAGATCAAGCCATGGATCTTGGAGAAGTGGTGAAAGAAGCAGTGGATCCCAAGGGGAAGGCATCAATGCTACAGCATCACGGCATTCATCAGCAACAACATCACGGAATCCATCAGCAACATCACGGCTTCCCCTTCCATTCATCGTCAGCAGGCTCTAGTGACACCACATCAAATATAGCTCAAGTGCAAGAGCCAAGCTTAGGGTTCCACCATCAGCACCATCAACACAGCAACGTCTTGCAGCTCGGTCAGGCTATGTTTGATCTCGACTTCGATCACTAGTCAATATGTGATGCACTCTCTCTCTCTCTCTCTCTCACCCACCCCTCCCTCCCTCTTTCTTTGTTTGTGCGCATAATCCGAATGTTTTTCCCTTTTTAAATTATCTGTGTCCATTGCTGTAATGTGGACATAGTAATGATAGTGTATGCTT
Copyright © 2023 Grassius.org | Last updated: 2023-06-26